Journal: Nanomaterials

Article Title: Unbiased and Signal-Weakening Photoelectrochemical Hexavalent Chromium Sensing via a CuO Film Photocathode

doi: 10.3390/nano13091479

Figure Lengend Snippet: ( a ) Photocurrent response curves for the CuO film photocathodes annealed at different temperatures under ON-OFF circular AM 1.5G illumination in the 10 mM tris HCl solution. ( b ) EIS curves of these photoelectrodes in ( a ) obtained in 0.1 M KCl solution mixing with 1 mM K 4 [Fe(CN) 6 ] and 1 mM K 3 [Fe(CN) 6 ].

Article Snippet: The employed light source was simulated AM 1.5G illumination (Enlitech, S-F7-3A, Taiwan, China) with a calibrated power density of 100 mW·cm −2 , and the 10 mM tris HCl (pH = 7) containing different and concentration-varying analytes was placed in a home-made quartz photolysis cell as the analytical fluid.

Techniques:

Journal: Polymers

Article Title: A Study on the Dynamic Forming Mechanism Development of the Negative Poisson’s Ratio Elastomer Molds—Plate to Plate (P2P) Forming Process

doi: 10.3390/polym13193255

Figure Lengend Snippet: Poisson’s ratio changes of 3 × 3 and 4 × 4 NPR arrays at different stretching lengths.

Article Snippet: The Poisson’s ratio changes during stretching within the elastic deformation range were simulated by ANSYS.

Techniques:

Journal: GigaScience

Article Title: Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

doi: 10.1093/gigascience/giad100

Figure Lengend Snippet: The benchmarking pipeline. For PacBio CLR and ONT (right panel), first we select 6 representative eukaryotes from the Tree of Life and use Badread's error and Qscore model generation feature to create 2 models of PacBio CLR and ONT long sequencing technologies. This is input to the read simulation stage, where we simulate reads from all genomes, with 4 different read length distributions. We then perform assembly of simulated and real reads, using 5 long-read assemblers. For PacBio HiFi (left panel), first we select 4 representative eukaryotes and use PBSIM3 to simulate HiFi reads. These reads are then assembled using 5 state-of-the-art HiFi assemblers. Lastly, we evaluate all PacBio HiFi, PacBio CLR, and ONT assemblies based on several criteria.

Article Snippet: Evaluation results for the S. cerevisiae Oxford Nanopore simulated read assemblies.

Techniques: Sequencing

Journal: GigaScience

Article Title: Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

doi: 10.1093/gigascience/giad100

Figure Lengend Snippet: The performance of the 5 assemblers on the read sets with default read lengths, from iteration 1 (see Table ), generated from 6 eukaryotic genomes. Six evaluation categories are reported for each assembler, and the results are normalized among all assemblies included in the figure. Ranges for each metric are reported as the best and worst values computed for these assemblies. The best-performing assembler is highlighted and has a black outline.

Article Snippet: Evaluation results for the S. cerevisiae Oxford Nanopore simulated read assemblies.

Techniques: Generated

Journal: GigaScience

Article Title: Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

doi: 10.1093/gigascience/giad100

Figure Lengend Snippet: The performance of the 5 assemblers on the real PacBio CLR and ONT reads (see ), sequenced from 6 eukaryotic genomes. As in Fig. , 6 evaluation categories are reported for each assembler, and the results are normalized among all assemblies included in the figure. Ranges for each metric are reported as the best and worst values computed for these assemblies. The best-performing assembler is highlighted and has a black outline.

Article Snippet: Evaluation results for the S. cerevisiae Oxford Nanopore simulated read assemblies.

Techniques:

Journal: GigaScience

Article Title: Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

doi: 10.1093/gigascience/giad100

Figure Lengend Snippet: The performance of the 5 assemblers on the real PacBio HiFi read sets and simulated PacBio HiFi read sets with default read lengths, from iteration 1 (see Table ), generated from 4 eukaryotic genomes. Six evaluation categories are reported for each assembler, and the results are normalized among all assemblies included in the figure. Ranges for each metric are reported as the best and worst values computed for these assemblies. The best-performing assembler is highlighted and has a black outline.

Article Snippet: Evaluation results for the S. cerevisiae Oxford Nanopore simulated read assemblies.

Techniques: Generated

Journal: GigaScience

Article Title: Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations

doi: 10.1093/gigascience/giad100

Figure Lengend Snippet: The left panel shows the performance of the 5 assemblers on all simulated PacBio CLR and ONT read sets, with 4 different read length distributions (as previously described in Table ). A score of 1–10 is reported for each assembler. We did not divide the auNGA with the N50 of the reference genomes for this figure. The results are normalized for each genome, per sequencing technology. For PacBio CLR and ONT, an average score for each read length distribution is first computed and then these 2 scores are averaged to obtain an overall score per read length distribution. For the A. thaliana and T. rubripes ONT iteration 4, the Canu assembly was not completed. Therefore, the iteration 4 bar in the plot represents only the PacBio CLR assemblies. Similarly, the right panel shows the performance of the 5 HiFi assemblers on all simulated PacBio HiFi read sets with 4 different read length distributions.

Article Snippet: Evaluation results for the S. cerevisiae Oxford Nanopore simulated read assemblies.

Techniques: Sequencing